geointel/backend/app/services/segmentation_service.py

from __future__ import annotations

import uuid
from datetime import UTC, datetime
from pathlib import Path
from typing import Any

from geoalchemy2.shape import from_shape, to_shape
from shapely.geometry import MultiPolygon, Polygon, mapping, shape
from shapely.validation import make_valid
from sqlalchemy import func

from app.core.config import Settings, get_settings
from app.core.errors import AppError
from app.models import AnalysisRun, Dataset, Job, Project, Segmentation, VectorFeature
from app.schemas.segmentation import (
    SegmentationListResponse,
    SegmentationRead,
    SegmentationRunListResponse,
    SegmentationRunRead,
    SegmentationRunResponse,
)
from app.services.detection_georeferencing import pixel_points_to_epsg4326_polygon
from app.services.detection_qa_service import DetectionQaService
from app.services.detection_service import DetectionService
from app.services.dataset_consumption_gate_service import DatasetConsumptionGate
from app.services.model_registry_service import ModelRegistryService
from app.services.qa_service import QaService
from app.services.quality_service import QualityService
from app.services.runtime_model_provenance_service import RuntimeModelProvenance, RuntimeModelProvenanceService
from app.services.segmentation_adapter import (
    FixtureSegmentationAdapter,
    SamSegmentationAdapter,
    YoloSegmentationAdapter,
)


class SegmentationService:
    @staticmethod
    def _now() -> datetime:
        return datetime.now(UTC)

    @staticmethod
    def run_segmentation(
        db,
        project_id: uuid.UUID,
        dataset_id: uuid.UUID,
        model_id: str,
        confidence_threshold: float,
        class_filter: list[str] | None = None,
        tile_manifest_path: str | None = None,
        parameters_json: dict[str, Any] | None = None,
        settings: Settings | None = None,
        yolo_seg_adapter_class: type[YoloSegmentationAdapter] = YoloSegmentationAdapter,
        sam_adapter_class: type[SamSegmentationAdapter] = SamSegmentationAdapter,
        existing_job: Job | None = None,
    ) -> SegmentationRunResponse:
        parameters = dict(parameters_json or {})
        resolved_settings = settings or get_settings()
        dataset = SegmentationService._validate_run_request(db, project_id=project_id, dataset_id=dataset_id)

        model = ModelRegistryService.get_model_capability(
            model_id,
            settings=resolved_settings,
            task_type="segmentation",
            yolo_seg_adapter_class=yolo_seg_adapter_class,
            sam_adapter_class=sam_adapter_class,
        )
        if model is None:
            raise AppError(code="SEGMENTATION_MODEL_NOT_FOUND", message="Segmentation model not found", status_code=404)
        if model.model_id == "fixture-segmenter" and parameters.get("fixture_mode") is not True:
            raise AppError(
                code="FIXTURE_MODE_REQUIRED",
                message="Fixture segmenter requires explicit fixture_mode=true",
                status_code=400,
            )
        configured_model_ids = {resolved_settings.yolo_seg_model_id, resolved_settings.sam_model_id}
        if model.model_id in configured_model_ids and model.configured and not tile_manifest_path:
            raise AppError(
                code="SEGMENTATION_TILE_MANIFEST_REQUIRED",
                message="Configured segmentation inference requires an existing raster tile manifest path",
                status_code=400,
            )

        # Production segmentation must consume only a passed, complete and
        # non-quarantined dataset. The fixture segmenter is QA/test-only and
        # cannot be classified as production inference.
        if model.model_id == "fixture-segmenter":
            DatasetConsumptionGate.assert_eligible(
                dataset,
                purpose="quality_assessment",
                fixture_mode=True,
            )
        elif model.model_id in configured_model_ids and model.configured:
            DatasetConsumptionGate.assert_eligible(dataset, purpose="production_inference")

        run_parameters = {
            "model_id": model.model_id,
            "confidence_threshold": confidence_threshold,
            "class_filter": class_filter or [],
            "tile_manifest_path": tile_manifest_path,
            "parameters_json": parameters,
        }
        job = SegmentationService._create_job(db, project_id, dataset_id, run_parameters, existing_job=existing_job)
        analysis_run = SegmentationService._create_analysis_run(db, project_id, dataset_id, job.id, model, run_parameters)

        if not model.configured:
            message = model.limitation_message
            SegmentationService._mark_failed(
                db,
                analysis_run,
                job,
                code="SEGMENTATION_MODEL_UNAVAILABLE",
                message=message,
            )
            return SegmentationRunResponse(
                analysis_run_id=analysis_run.id,
                job_id=job.id,
                project_id=project_id,
                dataset_id=dataset_id,
                model_id=model.model_id,
                status="failed",
                segmentation_count=0,
                error_code="SEGMENTATION_MODEL_UNAVAILABLE",
                message=message,
            )

        if model.model_id == "fixture-segmenter":
            try:
                segmentations = SegmentationService._persist_fixture_segmentations(
                    db=db,
                    project_id=project_id,
                    dataset_id=dataset_id,
                    analysis_run=analysis_run,
                    job=job,
                    model_name=model.model_id,
                    model_version=model.version,
                    raw_segmentations=parameters.get("fixture_segmentations"),
                    confidence_threshold=confidence_threshold,
                    class_filter=class_filter or [],
                    settings=resolved_settings,
                )
            except Exception as exc:
                # A rejected fixture payload must never leave the run stuck in "running".
                SegmentationService._fail_run_after_exception(db, analysis_run, job, exc, fallback_code="SEGMENTATION_INTERNAL_ERROR")
                raise
            SegmentationService._mark_success(db, analysis_run, job, segmentation_count=len(segmentations))
            return SegmentationRunResponse(
                analysis_run_id=analysis_run.id,
                job_id=job.id,
                project_id=project_id,
                dataset_id=dataset_id,
                model_id=model.model_id,
                status="success",
                segmentation_count=len(segmentations),
                message="Fixture segmentations persisted.",
            )

        if model.model_id in configured_model_ids:
            try:
                segmentations, postprocess_summary = SegmentationService._run_configured_segmentation(
                    db=db,
                    project_id=project_id,
                    dataset_id=dataset_id,
                    analysis_run=analysis_run,
                    job=job,
                    model_name=model.model_id,
                    model_version=model.version,
                    tile_manifest_path=tile_manifest_path,
                    confidence_threshold=confidence_threshold,
                    class_filter=class_filter or [],
                    settings=resolved_settings,
                    yolo_seg_adapter_class=yolo_seg_adapter_class,
                    sam_adapter_class=sam_adapter_class,
                )
            except AppError as exc:
                SegmentationService._mark_failed(db, analysis_run, job, code=exc.code, message=exc.message)
                return SegmentationRunResponse(
                    analysis_run_id=analysis_run.id,
                    job_id=job.id,
                    project_id=project_id,
                    dataset_id=dataset_id,
                    model_id=model.model_id,
                    status="failed",
                    segmentation_count=0,
                    error_code=exc.code,
                    message=exc.message,
                )
            except Exception as exc:
                # An unexpected inference error must never leave the run stuck in "running".
                SegmentationService._fail_run_after_exception(db, analysis_run, job, exc, fallback_code="SEGMENTATION_INTERNAL_ERROR")
                raise
            SegmentationService._mark_success(
                db,
                analysis_run,
                job,
                segmentation_count=len(segmentations),
                extra_result=postprocess_summary,
            )
            return SegmentationRunResponse(
                analysis_run_id=analysis_run.id,
                job_id=job.id,
                project_id=project_id,
                dataset_id=dataset_id,
                model_id=model.model_id,
                status="success",
                segmentation_count=len(segmentations),
                message="Configured segmentation inference persisted georeferenced masks.",
            )

        SegmentationService._mark_failed(
            db,
            analysis_run,
            job,
            code="SEGMENTATION_MODEL_UNAVAILABLE",
            message="Segmentation model is unavailable",
        )
        raise AppError(code="SEGMENTATION_MODEL_UNAVAILABLE", message="Segmentation model is unavailable", status_code=503)

    @staticmethod
    def _fail_run_after_exception(db, analysis_run: AnalysisRun, job: Job, exc: Exception, fallback_code: str) -> None:
        try:
            db.rollback()
        except Exception:
            pass
        code = getattr(exc, "code", None) or fallback_code
        message = getattr(exc, "message", None) or "Unexpected internal error during analysis run"
        try:
            SegmentationService._mark_failed(db, analysis_run, job, code=str(code), message=str(message))
        except Exception:
            pass

    @staticmethod
    def get_run(db, analysis_run_id: uuid.UUID) -> SegmentationRunRead:
        run = db.get(AnalysisRun, analysis_run_id)
        if not run or run.analysis_type != "segmentation":
            raise AppError(code="SEGMENTATION_RUN_NOT_FOUND", message="Segmentation run not found", status_code=404)
        return SegmentationRunRead.model_validate(run)

    @staticmethod
    def list_runs(
        db,
        *,
        project_id: uuid.UUID | None = None,
        dataset_id: uuid.UUID | None = None,
    ) -> SegmentationRunListResponse:
        query = db.query(AnalysisRun).filter(AnalysisRun.analysis_type == "segmentation")
        if project_id is not None:
            query = query.filter(AnalysisRun.project_id == project_id)
        if dataset_id is not None:
            query = query.filter(AnalysisRun.dataset_id == dataset_id)
        rows = query.order_by(AnalysisRun.created_at.desc()).all()
        return SegmentationRunListResponse(items=[SegmentationRunRead.model_validate(row) for row in rows], total=len(rows))

    @staticmethod
    def list_segmentations(
        db,
        analysis_run_id: uuid.UUID | None = None,
        *,
        dataset_id: uuid.UUID | None = None,
        class_name: str | None = None,
        min_confidence: float | None = None,
    ) -> SegmentationListResponse:
        if analysis_run_id is not None:
            run = db.get(AnalysisRun, analysis_run_id)
            if not run or run.analysis_type != "segmentation":
                raise AppError(code="SEGMENTATION_RUN_NOT_FOUND", message="Segmentation run not found", status_code=404)
        rows = SegmentationService._query_segmentation_rows(
            db,
            analysis_run_id=analysis_run_id,
            dataset_id=dataset_id,
            class_name=class_name,
            min_confidence=min_confidence,
        )
        items = [SegmentationRead.model_validate(row) for row in rows]
        return SegmentationListResponse(items=items, total=len(items))

    @staticmethod
    def get_segmentation(db, segmentation_id: uuid.UUID) -> SegmentationRead:
        segmentation = db.get(Segmentation, segmentation_id)
        if not segmentation:
            raise AppError(code="SEGMENTATION_NOT_FOUND", message="Segmentation not found", status_code=404)
        return SegmentationRead.model_validate(segmentation)

    @staticmethod
    def segmentations_to_geojson(
        db,
        *,
        analysis_run_id: uuid.UUID | None = None,
        dataset_id: uuid.UUID | None = None,
        class_name: str | None = None,
        min_confidence: float | None = None,
    ) -> dict[str, Any]:
        segmentations = SegmentationService._query_segmentation_rows(
            db,
            analysis_run_id=analysis_run_id,
            dataset_id=dataset_id,
            class_name=class_name,
            min_confidence=min_confidence,
        )
        return {
            "type": "FeatureCollection",
            "features": [
                {
                    "type": "Feature",
                    "id": str(segmentation.id),
                    "properties": SegmentationService._segmentation_properties(segmentation),
                    "geometry": mapping(to_shape(segmentation.geometry)),
                }
                for segmentation in segmentations
            ],
        }

    @staticmethod
    def compare_segmentations_with_reference(
        db,
        analysis_run_id: uuid.UUID,
        reference_dataset_id: uuid.UUID,
        iou_threshold: float = 0.5,
        class_name: str | None = None,
        min_confidence: float | None = None,
    ) -> dict[str, Any]:
        run = db.get(AnalysisRun, analysis_run_id)
        if not run or run.analysis_type != "segmentation":
            raise AppError(code="SEGMENTATION_RUN_NOT_FOUND", message="Segmentation run not found", status_code=404)
        reference_dataset = db.get(Dataset, reference_dataset_id)
        if not reference_dataset:
            raise AppError(code="DATASET_NOT_FOUND", message="Reference dataset not found", status_code=404)
        if reference_dataset.project_id != run.project_id:
            raise AppError(code="INVALID_DATASET_SCOPE", message="Reference dataset does not belong to segmentation project", status_code=400)
        if reference_dataset.dataset_type not in {"vector", "geojson"}:
            raise AppError(code="INVALID_DATASET_TYPE", message="Reference dataset must be vector data", status_code=400)

        candidate_dataset = db.get(Dataset, run.dataset_id)
        if not candidate_dataset:
            raise AppError(code="DATASET_NOT_FOUND", message="Segmentation source dataset not found", status_code=404)
        run_parameters = run.parameters_json if isinstance(run.parameters_json, dict) else {}
        fixture_parameters = run_parameters.get("parameters_json")
        fixture_mode = bool(
            run.model_name == "fixture-segmenter"
            and isinstance(fixture_parameters, dict)
            and fixture_parameters.get("fixture_mode") is True
        )
        DatasetConsumptionGate.assert_eligible(
            candidate_dataset,
            purpose="quality_assessment",
            fixture_mode=fixture_mode,
        )
        DatasetConsumptionGate.assert_eligible(
            reference_dataset,
            purpose="reference_validation",
            reference_task="building_validation",
        )

        segmentations = SegmentationService._query_segmentation_rows(
            db,
            analysis_run_id=analysis_run_id,
            dataset_id=run.dataset_id,
            class_name=class_name,
            min_confidence=min_confidence,
        )
        if not segmentations:
            raise AppError(
                code="SEGMENTATIONS_NOT_FOUND",
                message="Segmentation run has no persisted geometries for QA",
                status_code=422,
            )
        # Score against the footprint the model actually saw. Without this the
        # whole reference dataset is the denominator for recall, and every
        # building outside the inferred tiles is counted as a miss.
        manifest_path = DetectionQaService.tile_manifest_path(run_parameters)
        coverage = None
        if manifest_path:
            manifest = DetectionService._load_tile_manifest(manifest_path, get_settings().yolo_max_tiles)
            coverage = DetectionQaService.build_tile_coverage(
                manifest,
                manifest_path=manifest_path,
                expected_dataset_id=run.dataset_id,
            )

        reference_query = db.query(VectorFeature).filter(VectorFeature.dataset_id == reference_dataset_id)
        if coverage is not None and hasattr(reference_query, "count"):
            reference_raw_count = reference_query.count()
            references = reference_query.filter(
                func.ST_Intersects(VectorFeature.geometry, from_shape(coverage.geometry, srid=4326))
            ).all()
        else:
            references = reference_query.all()
            reference_raw_count = len(references)
        if reference_raw_count == 0:
            raise AppError(
                code="REFERENCE_FEATURES_NOT_FOUND",
                message="Reference dataset has no persisted vector features for QA",
                status_code=422,
            )

        raw_candidate_geometries = [
            (
                {"id": str(row.id), "class_name": row.class_name, "confidence": row.confidence},
                to_shape(row.geometry),
            )
            for row in segmentations
        ]
        raw_reference_geometries = [
            ({"id": str(row.id), "feature_class": row.feature_class}, to_shape(row.geometry)) for row in references
        ]
        candidate_geometries = raw_candidate_geometries
        reference_geometries = raw_reference_geometries

        coverage_summary: dict[str, Any] = {
            "applied": False,
            "mode": "unbounded_no_manifest",
            "manifest_path": None,
            "tile_count": 0,
            "source_crs_values": [],
            "candidate_raw_count": len(raw_candidate_geometries),
            "candidate_evaluated_count": len(raw_candidate_geometries),
            "candidate_excluded_outside_count": 0,
            "candidate_clipped_boundary_count": 0,
            "reference_raw_count": reference_raw_count,
            "reference_evaluated_count": len(raw_reference_geometries),
            "reference_excluded_outside_count": 0,
            "reference_clipped_boundary_count": 0,
        }
        coverage_warnings: list[str] = []
        if coverage is not None:
            candidate_population = DetectionQaService.filter_population(raw_candidate_geometries, coverage)
            reference_population = DetectionQaService.filter_population(
                raw_reference_geometries,
                coverage,
                raw_count=reference_raw_count,
            )
            candidate_geometries = candidate_population.geometries
            reference_geometries = reference_population.geometries
            if not reference_geometries:
                raise AppError(
                    code="REFERENCE_FEATURES_OUTSIDE_COVERAGE",
                    message="Reference dataset has no polygon features inside persisted inference tile coverage",
                    status_code=422,
                )
            coverage_summary = {
                "applied": True,
                "mode": "persisted_tile_manifest_union",
                "manifest_path": coverage.manifest_path,
                "tile_count": coverage.tile_count,
                "source_crs_values": list(coverage.source_crs_values),
                "candidate_raw_count": candidate_population.raw_count,
                "candidate_evaluated_count": candidate_population.evaluated_count,
                "candidate_excluded_outside_count": candidate_population.excluded_outside_count,
                "candidate_clipped_boundary_count": candidate_population.clipped_boundary_count,
                "reference_raw_count": reference_population.raw_count,
                "reference_evaluated_count": reference_population.evaluated_count,
                "reference_excluded_outside_count": reference_population.excluded_outside_count,
                "reference_clipped_boundary_count": reference_population.clipped_boundary_count,
            }
            coverage_warnings.append(
                "QA populations were clipped to the union of persisted inference tile footprints before matching."
            )

        evidence = QaService._match_io_u_evidence(
            candidate_geometries,
            reference_geometries,
            iou_threshold,
        )
        mean_iou = None if not evidence.match_iou_values else sum(evidence.match_iou_values) / len(evidence.match_iou_values)
        precision = evidence.matches / (evidence.matches + evidence.false_positives) if evidence.matches + evidence.false_positives > 0 else None
        recall = evidence.matches / (evidence.matches + evidence.false_negatives) if evidence.matches + evidence.false_negatives > 0 else None
        f1_score = None
        if precision is not None and recall is not None:
            f1_score = (2 * precision * recall) / (precision + recall) if precision + recall > 0 else 0.0
        status = "unsupported" if evidence.unsupported else "ok"
        quality_check = QualityService.persist_quality_check(
            db=db,
            project_id=run.project_id,
            analysis_run_id=analysis_run_id,
            candidate_dataset_id=run.dataset_id,
            reference_dataset_id=reference_dataset_id,
            check_type="segmentations_vs_reference",
            status=status,
            score=f1_score,
            parameters={
                "analysis_run_id": str(analysis_run_id),
                "reference_dataset_id": str(reference_dataset_id),
                "iou_threshold": iou_threshold,
                "class_name": class_name,
                "min_confidence": min_confidence,
                "coverage_policy": coverage_summary["mode"],
            },
            findings={
                "matches": evidence.matches,
                "false_positives": evidence.false_positives,
                "false_negatives": evidence.false_negatives,
                "warnings": coverage_warnings + evidence.warnings,
                "unsupported_geometry": evidence.unsupported,
                "coverage": coverage_summary,
                "match_evidence": evidence.match_evidence,
                "false_positive_evidence": evidence.false_positive_evidence,
                "false_negative_evidence": evidence.false_negative_evidence,
            },
            metrics={
                "precision": precision,
                "recall": recall,
                "f1": f1_score,
                "mean_iou": mean_iou,
                "false_positive_count": evidence.false_positives,
                "false_negative_count": evidence.false_negatives,
            },
        )
        return {
            "status": status,
            "quality_check_id": str(quality_check.id),
            "analysis_run_id": str(analysis_run_id),
            "reference_dataset_id": str(reference_dataset_id),
            "candidate_feature_count": len(candidate_geometries),
            "reference_feature_count": len(reference_geometries),
            "candidate_feature_count_raw": len(raw_candidate_geometries),
            "reference_feature_count_raw": reference_raw_count,
            "matches": evidence.matches,
            "false_positives": evidence.false_positives,
            "false_negatives": evidence.false_negatives,
            "precision": precision,
            "recall": recall,
            "f1_score": f1_score,
            "mean_iou": mean_iou,
            "iou_threshold": iou_threshold,
            "warnings": coverage_warnings + evidence.warnings,
            "coverage": coverage_summary,
            "match_evidence": evidence.match_evidence,
            "false_positive_evidence": evidence.false_positive_evidence,
            "false_negative_evidence": evidence.false_negative_evidence,
        }

    @staticmethod
    def mask_artifact_path(storage_root: str, project_id: uuid.UUID, analysis_run_id: uuid.UUID, tile_index: int | None, segmentation_id: uuid.UUID) -> str:
        tile_folder = f"tile_{tile_index if tile_index is not None else 0}"
        return (Path(storage_root) / "masks" / str(project_id) / str(analysis_run_id) / tile_folder / f"mask_{segmentation_id}.png").as_posix()

    @staticmethod
    def _create_job(
        db,
        project_id: uuid.UUID,
        dataset_id: uuid.UUID,
        parameters: dict[str, Any],
        existing_job: Job | None = None,
    ) -> Job:
        if existing_job is not None:
            # Reuse the queued job so the operator polls one identifier.
            existing_job.status = "running"
            existing_job.dataset_id = dataset_id
            existing_job.input_dataset_id = dataset_id
            existing_job.parameters_json = {**(existing_job.parameters_json or {}), **parameters}
            existing_job.started_at = SegmentationService._now()
            db.add(existing_job)
            db.commit()
            db.refresh(existing_job)
            return existing_job
        job = Job(
            id=uuid.uuid4(),
            job_type="segmentation.run",
            status="running",
            project_id=project_id,
            dataset_id=dataset_id,
            input_dataset_id=dataset_id,
            parameters_json=parameters,
            started_at=SegmentationService._now(),
        )
        db.add(job)
        db.commit()
        db.refresh(job)
        return job

    @staticmethod
    def _validate_run_request(db, *, project_id: uuid.UUID, dataset_id: uuid.UUID) -> Dataset:
        project = db.get(Project, project_id)
        if not project:
            raise AppError(code="PROJECT_NOT_FOUND", message="Project not found", status_code=404)
        dataset = db.get(Dataset, dataset_id)
        if not dataset or dataset.project_id != project_id:
            raise AppError(code="DATASET_NOT_FOUND", message="Dataset not found", status_code=404)
        if dataset.dataset_type != "raster":
            raise AppError(
                code="INVALID_DATASET_TYPE",
                message="Segmentation requires a raster dataset",
                details={"dataset_type": dataset.dataset_type},
                status_code=400,
            )
        return dataset

    @staticmethod
    def enqueue_segmentation(
        db,
        project_id: uuid.UUID,
        dataset_id: uuid.UUID,
        model_id: str,
        confidence_threshold: float,
        class_filter: list[str] | None = None,
        tile_manifest_path: str | None = None,
        parameters_json: dict[str, Any] | None = None,
    ) -> Job:
        """Accept a segmentation run for background execution."""

        SegmentationService._validate_run_request(db, project_id=project_id, dataset_id=dataset_id)
        job = Job(
            id=uuid.uuid4(),
            job_type="segmentation.run",
            status="queued",
            project_id=project_id,
            dataset_id=dataset_id,
            input_dataset_id=dataset_id,
            parameters_json={
                "project_id": str(project_id),
                "dataset_id": str(dataset_id),
                "model_id": model_id,
                "confidence_threshold": confidence_threshold,
                "class_filter": class_filter or [],
                "tile_manifest_path": tile_manifest_path,
                "parameters_json": dict(parameters_json or {}),
            },
        )
        db.add(job)
        db.commit()
        db.refresh(job)
        return job

    @staticmethod
    def _create_analysis_run(db, project_id, dataset_id, job_id, model, parameters: dict[str, Any]) -> AnalysisRun:
        analysis_run = AnalysisRun(
            id=uuid.uuid4(),
            project_id=project_id,
            dataset_id=dataset_id,
            job_id=job_id,
            analysis_type="segmentation",
            status="running",
            model_name=model.model_id,
            model_version=model.version,
            parameters_json=parameters,
            started_at=SegmentationService._now(),
        )
        db.add(analysis_run)
        db.commit()
        db.refresh(analysis_run)
        return analysis_run

    @staticmethod
    def _mark_failed(db, analysis_run: AnalysisRun, job: Job, code: str, message: str) -> None:
        result = {"error_code": code, "message": message, "segmentation_count": 0}
        analysis_run.status = "failed"
        analysis_run.finished_at = SegmentationService._now()
        analysis_run.error_message = message
        analysis_run.result_json = result
        job.status = "failed"
        job.finished_at = analysis_run.finished_at
        job.error_message = message
        job.result_json = result
        db.add(analysis_run)
        db.add(job)
        db.commit()
        db.refresh(analysis_run)
        db.refresh(job)

    @staticmethod
    def _mark_success(db, analysis_run: AnalysisRun, job: Job, segmentation_count: int, extra_result: dict[str, Any] | None = None) -> None:
        result = {"segmentation_count": segmentation_count}
        if extra_result:
            result.update(extra_result)
        analysis_run.status = "success"
        analysis_run.finished_at = SegmentationService._now()
        analysis_run.result_json = result
        job.status = "success"
        job.finished_at = analysis_run.finished_at
        job.result_json = result
        db.add(analysis_run)
        db.add(job)
        db.commit()
        db.refresh(analysis_run)
        db.refresh(job)

    @staticmethod
    def _run_configured_segmentation(
        db,
        project_id: uuid.UUID,
        dataset_id: uuid.UUID,
        analysis_run: AnalysisRun,
        job: Job,
        model_name: str,
        model_version: str | None,
        tile_manifest_path: str | None,
        confidence_threshold: float,
        class_filter: list[str],
        settings: Settings,
        yolo_seg_adapter_class: type[YoloSegmentationAdapter],
        sam_adapter_class: type[SamSegmentationAdapter],
    ) -> tuple[list[Segmentation], dict[str, Any]]:
        manifest = DetectionService._load_tile_manifest(tile_manifest_path, settings.yolo_max_tiles)
        if model_name == settings.sam_model_id:
            model_path = Path(settings.sam_model_path or "").expanduser()
            allowed_frameworks = ("ultralytics/sam", "sam", "ultralytics", "pytorch")
            adapter = sam_adapter_class(settings)
        else:
            model_path = Path(settings.yolo_seg_model_path or "").expanduser()
            allowed_frameworks = ("ultralytics/pytorch", "ultralytics", "pytorch")
            adapter = yolo_seg_adapter_class(settings)
        runtime_model_provenance = RuntimeModelProvenanceService.validate_for_production_runtime(
            db=db,
            model_path=model_path,
            model_id=model_name,
            task_type="segmentation",
            expected_model_version=model_version,
            allowed_frameworks=allowed_frameworks,
        )
        SegmentationService._attach_runtime_model_provenance(
            analysis_run,
            job,
            runtime_model_provenance,
        )
        model = adapter.load_model(model_path)

        allowed_classes = {DetectionService._canonical_class_name(value) for value in class_filter if DetectionService._canonical_class_name(value)}
        manifest_crs = DetectionService._require_manifest_crs(manifest)
        candidates: list[dict[str, Any]] = []
        for tile in manifest["tiles"]:
            tile_path = DetectionService._resolve_tile_path(tile, Path(tile_manifest_path or "").expanduser())
            for raw in adapter.predict_tile(model, tile_path, confidence_threshold):
                model_class_name = str(raw.get("class_name") or "").strip()
                class_name = DetectionService._canonical_class_name(model_class_name)
                confidence = raw.get("confidence")
                confidence = float(confidence) if confidence is not None else None
                if allowed_classes and class_name not in allowed_classes:
                    continue
                if confidence is not None and confidence < confidence_threshold:
                    continue
                points = raw.get("points")
                if not isinstance(points, list) or len(points) < 3:
                    continue
                geometry = pixel_points_to_epsg4326_polygon(points=points, tile=tile, crs=tile.get("crs") or manifest_crs)
                properties = dict(raw.get("properties") or {})
                if model_class_name and model_class_name != class_name:
                    properties.setdefault("model_class_name", model_class_name)
                candidates.append(
                    {
                        "class_name": class_name,
                        "confidence": confidence if confidence is not None else 0.0,
                        "reported_confidence": confidence,
                        "geometry": geometry,
                        "bbox": raw.get("bbox"),
                        "source_tile_path": str(tile_path),
                        "tile_index": tile.get("index"),
                        "properties": {**properties, "tile_index": tile.get("index")},
                    }
                )
        filtered_candidates = DetectionService._suppress_duplicate_candidates(
            candidates,
            iou_threshold=float(settings.segmentation_duplicate_iou_threshold),
        )
        persisted: list[Segmentation] = []
        for candidate in filtered_candidates:
            geometry = candidate["geometry"]
            if isinstance(geometry, Polygon):
                geometry = MultiPolygon([geometry])
            bbox = candidate.get("bbox")
            bbox_json = None
            if isinstance(bbox, list) and len(bbox) == 4:
                bbox_json = {
                    "x_min": float(bbox[0]),
                    "y_min": float(bbox[1]),
                    "x_max": float(bbox[2]),
                    "y_max": float(bbox[3]),
                }
            segmentation = Segmentation(
                id=uuid.uuid4(),
                project_id=project_id,
                dataset_id=dataset_id,
                analysis_run_id=analysis_run.id,
                job_id=job.id,
                model_name=model_name,
                model_version=model_version,
                class_name=candidate["class_name"],
                confidence=candidate["reported_confidence"],
                geometry=from_shape(geometry, srid=4326),
                bbox_json=bbox_json,
                area_m2=SegmentationService._geodesic_area_m2(geometry),
                mask_path=None,
                source_tile_path=candidate["source_tile_path"],
                tile_index=candidate["tile_index"] if isinstance(candidate["tile_index"], int) else None,
                properties_json=candidate["properties"],
                provenance_json={
                    "inference": "local",
                    "model_id": model_name,
                    "tile_manifest_path": str(Path(tile_manifest_path or "").expanduser()),
                    "tile_index": candidate["tile_index"],
                    "device": settings.yolo_device,
                    "runtime_model_provenance": runtime_model_provenance.as_dict(),
                },
            )
            db.add(segmentation)
            persisted.append(segmentation)
        db.commit()
        for segmentation in persisted:
            db.refresh(segmentation)
        return persisted, {
            "raw_segmentation_count": len(candidates),
            "suppressed_segmentation_count": len(candidates) - len(filtered_candidates),
            "duplicate_iou_threshold": float(settings.segmentation_duplicate_iou_threshold),
            "tile_manifest_path": str(Path(tile_manifest_path or "").expanduser()),
            "runtime_model_provenance": runtime_model_provenance.as_dict(),
        }

    @staticmethod
    def _attach_runtime_model_provenance(
        analysis_run: AnalysisRun,
        job: Job,
        provenance: RuntimeModelProvenance,
    ) -> None:
        """Record immutable model evidence with a configured segmentation run."""

        evidence = provenance.as_dict()
        analysis_parameters = dict(analysis_run.parameters_json or {})
        analysis_parameters["runtime_model_provenance"] = evidence
        analysis_run.parameters_json = analysis_parameters
        job_parameters = dict(job.parameters_json or {})
        job_parameters["runtime_model_provenance"] = evidence
        job.parameters_json = job_parameters

    @staticmethod
    def _geodesic_area_m2(geometry: MultiPolygon | Polygon) -> float | None:
        try:
            from pyproj import Geod

            area, _ = Geod(ellps="WGS84").geometry_area_perimeter(geometry)
            return abs(float(area))
        except Exception:
            return None

    @staticmethod
    def _persist_fixture_segmentations(
        db,
        project_id: uuid.UUID,
        dataset_id: uuid.UUID,
        analysis_run: AnalysisRun,
        job: Job,
        model_name: str,
        model_version: str | None,
        raw_segmentations: Any,
        confidence_threshold: float,
        class_filter: list[str],
        settings: Settings,
    ) -> list[Segmentation]:
        if not isinstance(raw_segmentations, list):
            raise AppError(code="INVALID_FIXTURE_SEGMENTATIONS", message="fixture_segmentations must be a list", status_code=400)
        adapter = FixtureSegmentationAdapter()
        adapter_results = adapter.segment(raw_segmentations)
        if len(adapter_results) != len(raw_segmentations):
            raise AppError(code="INVALID_FIXTURE_SEGMENTATION", message="Each fixture segmentation must be an object", status_code=400)
        persisted: list[Segmentation] = []
        allowed_classes = set(class_filter)
        for raw in adapter_results:
            class_name = raw.class_name
            confidence = raw.confidence
            if allowed_classes and class_name not in allowed_classes:
                continue
            if confidence is not None and confidence < confidence_threshold:
                continue
            if not isinstance(raw.geometry, dict):
                raise AppError(code="INVALID_FIXTURE_SEGMENTATION", message="Fixture segmentation geometry is required", status_code=400)
            geometry = SegmentationService._validated_multipolygon(raw.geometry)
            segmentation_id = uuid.uuid4()
            mask_path = raw.mask_path or SegmentationService.mask_artifact_path(
                settings.storage_root,
                project_id,
                analysis_run.id,
                raw.tile_index,
                segmentation_id,
            )
            segmentation = Segmentation(
                id=segmentation_id,
                project_id=project_id,
                dataset_id=dataset_id,
                analysis_run_id=analysis_run.id,
                job_id=job.id,
                model_name=model_name,
                model_version=model_version,
                class_name=class_name,
                confidence=confidence,
                geometry=from_shape(geometry, srid=4326),
                bbox_json=raw.bbox_json,
                area_m2=raw.area_m2,
                mask_path=mask_path,
                source_tile_path=raw.source_tile_path,
                tile_index=raw.tile_index,
                properties_json=raw.properties_json,
                provenance_json={**dict(raw.provenance_json or {}), "fixture_mode": True},
            )
            db.add(segmentation)
            persisted.append(segmentation)
        db.commit()
        for segmentation in persisted:
            db.refresh(segmentation)
        return persisted

    @staticmethod
    def _validated_multipolygon(geometry_payload: dict[str, Any]) -> MultiPolygon:
        try:
            geometry = shape(geometry_payload)
        except Exception as exc:
            raise AppError(code="INVALID_FIXTURE_GEOMETRY", message="Fixture segmentation geometry must be valid GeoJSON", status_code=400) from exc
        if geometry.is_empty:
            raise AppError(code="INVALID_FIXTURE_GEOMETRY", message="Fixture segmentation geometry must not be empty", status_code=400)
        if not geometry.is_valid:
            geometry = make_valid(geometry)
        if geometry.is_empty or not geometry.is_valid:
            raise AppError(code="INVALID_FIXTURE_GEOMETRY", message="Fixture segmentation geometry must be valid", status_code=400)
        if isinstance(geometry, Polygon):
            geometry = MultiPolygon([geometry])
        if not isinstance(geometry, MultiPolygon):
            raise AppError(code="INVALID_FIXTURE_GEOMETRY", message="Fixture segmentation geometry must be Polygon or MultiPolygon", status_code=400)
        if geometry.area <= 0:
            raise AppError(code="INVALID_FIXTURE_GEOMETRY", message="Fixture segmentation geometry must have positive area", status_code=400)
        return geometry

    @staticmethod
    def _query_segmentation_rows(
        db,
        *,
        analysis_run_id: uuid.UUID | None = None,
        dataset_id: uuid.UUID | None = None,
        class_name: str | None = None,
        min_confidence: float | None = None,
    ) -> list[Segmentation]:
        query = db.query(Segmentation)
        if analysis_run_id is not None:
            query = query.filter(Segmentation.analysis_run_id == analysis_run_id)
        if dataset_id is not None:
            query = query.filter(Segmentation.dataset_id == dataset_id)
        if class_name:
            query = query.filter(Segmentation.class_name == class_name)
        if min_confidence is not None:
            query = query.filter(Segmentation.confidence >= min_confidence)
        # One transaction timestamp is shared by every row in a run, so
        # ordering by it alone leaves the row order — and therefore the QA
        # score — undefined. See DetectionService._query_detection_rows.
        return query.order_by(
            Segmentation.confidence.desc(),
            Segmentation.created_at.desc(),
            Segmentation.id.asc(),
        ).all()

    @staticmethod
    def _segmentation_properties(segmentation: Segmentation) -> dict[str, Any]:
        return {
            "segmentation_id": str(segmentation.id),
            "class_name": segmentation.class_name,
            "confidence": segmentation.confidence,
            "area_m2": segmentation.area_m2,
            "model_name": segmentation.model_name,
            "model_version": segmentation.model_version,
            "analysis_run_id": str(segmentation.analysis_run_id) if segmentation.analysis_run_id else None,
            "dataset_id": str(segmentation.dataset_id) if segmentation.dataset_id else None,
            "job_id": str(segmentation.job_id) if segmentation.job_id else None,
            "source_tile_path": segmentation.source_tile_path,
            "tile_index": segmentation.tile_index,
            "mask_path": segmentation.mask_path,
            "bbox_json": segmentation.bbox_json,
            "provenance_json": segmentation.provenance_json,
        }