feat: add coverage-aware Mol benchmark

scripts/run_mol_operational_validation.sh

@@ -17,6 +17,10 @@ Optional environment:
   QUALITY_TILE_OVERLAPS        Default: 64.
   QUALITY_THRESHOLDS           Default: 0.15.
   REAL_IOU_THRESHOLD           Default: 0.25.
+  MOL_MIN_MEAN_F1              Operational gate, default: 0.25.
+  MOL_MIN_ZONE_F1              Per-zone collapse gate, default: 0.10.
+  MOL_MIN_REFERENCE_COVERAGE   Minimum evaluated/raw reference ratio, default: 0.95.
+  MOL_MAX_BACKGROUND_DETECTIONS Maximum detections per pure-empty control, default: 0.
 
 The runner never downloads weights, fetches product providers or uses fixture
 outputs. Prepare the documented real orthophoto/GRB files explicitly first.
@@ -41,6 +45,10 @@ QUALITY_TILE_SIZES="${QUALITY_TILE_SIZES:-512}"
 QUALITY_TILE_OVERLAPS="${QUALITY_TILE_OVERLAPS:-64}"
 QUALITY_THRESHOLDS="${QUALITY_THRESHOLDS:-0.15}"
 REAL_IOU_THRESHOLD="${REAL_IOU_THRESHOLD:-0.25}"
+MOL_MIN_MEAN_F1="${MOL_MIN_MEAN_F1:-0.25}"
+MOL_MIN_ZONE_F1="${MOL_MIN_ZONE_F1:-0.10}"
+MOL_MIN_REFERENCE_COVERAGE="${MOL_MIN_REFERENCE_COVERAGE:-0.95}"
+MOL_MAX_BACKGROUND_DETECTIONS="${MOL_MAX_BACKGROUND_DETECTIONS:-0}"
 
 if [ "${BASE_URL}" = "-h" ] || [ "${BASE_URL}" = "--help" ]; then
   usage
@@ -213,3 +221,16 @@ lines = [
 (output_dir / "mol_operational_validation_summary.md").write_text("\n".join(lines) + "\n", encoding="utf-8")
 print(json.dumps({"status": summary["status"], "summary_path": str(summary_path)}, indent=2))
 PY
+
+"${PYTHON_BIN}" scripts/build_mol_operational_benchmark_report.py \
+  --positive-summary "${positive_output_dir}/multi_sample_quality_summary.json" \
+  --background-summary "${background_output_dir}/hard_negative_matrix_summary.json" \
+  --manifest-path "${OPERATOR_SAMPLE_MANIFEST_PATH}" \
+  --output-dir "${MOL_VALIDATION_OUTPUT_DIR}" \
+  --base-url "${BASE_URL}" \
+  --min-positive-samples 4 \
+  --min-background-samples 1 \
+  --min-mean-f1 "${MOL_MIN_MEAN_F1}" \
+  --min-zone-f1 "${MOL_MIN_ZONE_F1}" \
+  --min-reference-coverage-ratio "${MOL_MIN_REFERENCE_COVERAGE}" \
+  --max-background-detections "${MOL_MAX_BACKGROUND_DETECTIONS}"