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This commit is contained in:
Codex
2026-07-18 00:12:34 +02:00
parent 9513f8613e
commit 9c402e0df2
36 changed files with 2235 additions and 115 deletions
+14 -1
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@@ -1,6 +1,19 @@
# GeoIntel Backend (Sprint 3 foundation layer)
FastAPI backend for GeoIntel Kempen Foundation Sprints.
FastAPI backend for the GeoIntel Belgium and Belgian North Sea workbench.
Runtime probes:
- `GET /health/live`: process liveness, always independent from PostgreSQL.
- `GET /health/ready`: fail-closed database/PostGIS/migration/storage
readiness used by Docker.
- `GET /health`: compatibility alias for readiness.
- `GET /api/v1/system/capabilities`: runtime-derived PostGIS, GIS dependency,
configured YOLO and provider state.
The all-in-one production runtime enables interrupted job/analysis-run
reconciliation at startup. Local tests and development leave it disabled
unless `GEOINTEL_RECONCILE_INTERRUPTED_RUNS_ON_STARTUP=true`.
The map-first explorer uses the existing persisted vector selection endpoint. Its bounded GeoJSON preview reports `feature_count`, while `total_feature_count` reports the exact PostGIS intersection count before the 1,000-feature response cap. When an active `area_id` is supplied, vector, temporal, derived-dataset and export paths all use `bbox ∩ Area`. A full-work-area bbox resolves to the exact persisted Area geometry; a boundary-crossing rectangle is clipped to the official boundary.
+141 -21
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@@ -1,12 +1,23 @@
from __future__ import annotations
from importlib import import_module
from sqlalchemy import text
from fastapi import APIRouter
from pathlib import Path
from tempfile import NamedTemporaryFile
from app.schemas.health import HealthResponse, SystemCapabilities
from app.providers.registry import list_provider_capabilities
from alembic.config import Config
from alembic.script import ScriptDirectory
from fastapi import APIRouter, Response, status
from sqlalchemy import text
from app.core.config import get_settings
from app.db.session import get_engine
from app.providers.registry import list_provider_capabilities
from app.schemas.health import (
HealthResponse,
SystemCapabilities,
SystemCapabilitiesEnvelope,
)
from app.services.model_registry_service import ModelRegistryService
router = APIRouter()
@@ -19,27 +30,136 @@ def _dependency_enabled(module: str) -> bool:
return False
@router.get("/health")
def readiness() -> HealthResponse:
db_status = "ok"
def _expected_migration_heads() -> list[str]:
backend_root = Path(__file__).resolve().parents[3]
config = Config(str(backend_root / "alembic.ini"))
config.set_main_option("script_location", str(backend_root / "alembic"))
return list(ScriptDirectory.from_config(config).get_heads())
def _database_checks() -> dict[str, str]:
checks = {
"database": "degraded",
"postgis": "degraded",
"migration": "degraded",
}
try:
with get_engine().connect() as connection:
connection.execute(text("SELECT 1"))
checks["database"] = "ok"
postgis_version = connection.execute(
text("SELECT PostGIS_Version()")
).scalar_one()
checks["postgis"] = f"ok:{postgis_version}"
database_head = connection.execute(
text("SELECT version_num FROM alembic_version")
).scalar_one()
expected_heads = _expected_migration_heads()
if len(expected_heads) == 1 and database_head == expected_heads[0]:
checks["migration"] = f"ok:{database_head}"
else:
checks["migration"] = (
f"degraded:database={database_head};"
f"expected={','.join(expected_heads) or 'none'}"
)
except Exception:
db_status = "degraded"
return HealthResponse(status="ok", service="geointel-backend", version="0.1.0", database=db_status)
return checks
return checks
@router.get("/api/v1/system/capabilities")
def capabilities() -> dict:
def _storage_check(storage_root: str) -> str:
root = Path(storage_root).expanduser()
try:
root.mkdir(parents=True, exist_ok=True)
with NamedTemporaryFile(
prefix=".geointel-readiness-",
dir=root,
delete=True,
) as handle:
handle.write(b"ok")
handle.flush()
return "ok"
except OSError:
return "degraded"
def _readiness_payload() -> HealthResponse:
settings = get_settings()
checks = _database_checks()
checks["storage"] = _storage_check(settings.storage_root)
ready = all(
value == "ok" or value.startswith("ok:")
for value in checks.values()
)
return HealthResponse(
status="ok" if ready else "degraded",
service="geointel-backend",
version=settings.app_version,
build_sha=settings.build_sha,
build_time=settings.build_time,
database=checks["database"],
postgis=checks["postgis"],
migration=checks["migration"],
storage=checks["storage"],
checks=checks,
)
@router.get("/health/live", response_model=HealthResponse)
def liveness() -> HealthResponse:
settings = get_settings()
return HealthResponse(
status="ok",
service="geointel-backend",
version=settings.app_version,
build_sha=settings.build_sha,
build_time=settings.build_time,
)
def _readiness_response(response: Response) -> HealthResponse:
payload = _readiness_payload()
if payload.status != "ok":
response.status_code = status.HTTP_503_SERVICE_UNAVAILABLE
return payload
@router.get("/health", response_model=HealthResponse)
def readiness(response: Response) -> HealthResponse:
return _readiness_response(response)
@router.get("/health/ready", response_model=HealthResponse)
def readiness_explicit(response: Response) -> HealthResponse:
return _readiness_response(response)
@router.get(
"/api/v1/system/capabilities",
response_model=SystemCapabilitiesEnvelope,
)
def capabilities() -> SystemCapabilitiesEnvelope:
settings = get_settings()
providers = [item.to_dict() for item in list_provider_capabilities()]
return {"data": SystemCapabilities(
postgis=True,
rasterio=_dependency_enabled("rasterio"),
geopandas=_dependency_enabled("geopandas"),
yolo=False,
sam=False,
grb="bounded",
sentinel="planned",
providers=providers,
).model_dump()}
configured_yolo = ModelRegistryService.get_model_capability(
settings.yolo_model_id,
settings=settings,
)
yolo_configured = bool(configured_yolo and configured_yolo.configured)
yolo_status = configured_yolo.status if configured_yolo else "not_configured"
postgis_ready = _database_checks()["postgis"].startswith("ok:")
return SystemCapabilitiesEnvelope(
data=SystemCapabilities(
postgis=postgis_ready,
rasterio=_dependency_enabled("rasterio"),
geopandas=_dependency_enabled("geopandas"),
yolo=yolo_configured,
yolo_status=yolo_status,
sam=False,
grb="bounded",
sentinel="planned",
version=settings.app_version,
build_sha=settings.build_sha,
providers=providers,
)
)
+7
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@@ -12,6 +12,8 @@ class Settings(BaseSettings):
app_env: str = Field(default="development", validation_alias="GEOINTEL_ENV")
app_version: str = Field(default="0.1.0")
build_sha: str | None = Field(default=None, validation_alias="GEOINTEL_BUILD_SHA")
build_time: str | None = Field(default=None, validation_alias="GEOINTEL_BUILD_TIME")
api_prefix: str = Field(default="/api/v1", validation_alias="GEOINTEL_API_PREFIX")
database_url: str = Field(
default="postgresql+psycopg://geointel:geointel@localhost:5432/geointel?connect_timeout=1",
@@ -231,6 +233,11 @@ class Settings(BaseSettings):
thematic_raster_max_response_mb: int = Field(default=160, ge=1, validation_alias="THEMATIC_RASTER_MAX_RESPONSE_MB")
redis_url: str | None = Field(default=None, validation_alias="REDIS_URL")
log_level: str = Field(default="INFO", validation_alias="GEOINTEL_LOG_LEVEL")
sql_log_level: str = Field(default="WARNING", validation_alias="GEOINTEL_SQL_LOG_LEVEL")
reconcile_interrupted_runs_on_startup: bool = Field(
default=False,
validation_alias="GEOINTEL_RECONCILE_INTERRUPTED_RUNS_ON_STARTUP",
)
database_statement_timeout_ms: int = Field(default=5_000, validation_alias="DATABASE_STATEMENT_TIMEOUT_MS")
yolo_enabled: bool = Field(default=False, validation_alias="YOLO_ENABLED")
yolo_models_dir: str = Field(default="/app/models", validation_alias="YOLO_MODELS_DIR")
+4 -2
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@@ -2,11 +2,13 @@ import logging
import sys
def configure_logging(level: str = "INFO") -> None:
def configure_logging(level: str = "INFO", sql_level: str = "WARNING") -> None:
logging.basicConfig(
level=level,
format="%(asctime)s | %(levelname)s | %(name)s | %(message)s",
stream=sys.stdout,
force=True,
)
for name in ["uvicorn", "uvicorn.error", "uvicorn.access", "sqlalchemy.engine"]:
for name in ["uvicorn", "uvicorn.error", "uvicorn.access"]:
logging.getLogger(name).setLevel(level)
logging.getLogger("sqlalchemy.engine").setLevel(sql_level)
+50 -7
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@@ -1,5 +1,9 @@
from __future__ import annotations
import logging
import uuid
from contextlib import asynccontextmanager
from fastapi import FastAPI, HTTPException, Request
from fastapi.exceptions import RequestValidationError
from fastapi.middleware.cors import CORSMiddleware
@@ -9,6 +13,11 @@ from app.api.routes import analysis, areas, assistant, datasets, demo, detection
from app.core.config import get_settings
from app.core.errors import AppError
from app.core.logging import configure_logging
from app.db.session import SessionLocal
from app.services.runtime_reconciliation_service import RuntimeReconciliationService
logger = logging.getLogger("geointel")
def _to_error_payload(
@@ -27,13 +36,33 @@ def _to_error_payload(
def create_app() -> FastAPI:
settings = get_settings()
configure_logging(settings.log_level)
configure_logging(settings.log_level, settings.sql_log_level)
@asynccontextmanager
async def lifespan(_: FastAPI):
if settings.reconcile_interrupted_runs_on_startup:
db = SessionLocal()
try:
result = RuntimeReconciliationService.reconcile(db)
logger.info(
"Runtime reconciliation completed: jobs=%s analysis_runs=%s",
result.interrupted_jobs,
result.interrupted_analysis_runs,
)
except Exception:
db.rollback()
logger.exception("Runtime reconciliation failed")
raise
finally:
db.close()
yield
app = FastAPI(
title="GeoIntel Kempen",
title="GeoIntel",
version=settings.app_version,
docs_url="/docs",
redoc_url="/redoc",
lifespan=lifespan,
)
app.add_middleware(
@@ -60,6 +89,14 @@ def create_app() -> FastAPI:
app.include_router(temporal.router, prefix=settings.api_prefix)
app.include_router(assistant.router, prefix=settings.api_prefix)
@app.middleware("http")
async def request_identity(request: Request, call_next):
request_id = request.headers.get("x-request-id") or str(uuid.uuid4())
request.state.request_id = request_id
response = await call_next(request)
response.headers["x-request-id"] = request_id
return response
@app.exception_handler(AppError)
async def app_error(request: Request, exc: AppError): # noqa: ARG001
return JSONResponse(
@@ -68,7 +105,7 @@ def create_app() -> FastAPI:
exc.code,
exc.message,
exc.details,
request_id=request.headers.get("x-request-id"),
request_id=request.state.request_id,
),
)
@@ -88,7 +125,7 @@ def create_app() -> FastAPI:
code,
message,
details,
request_id=request.headers.get("x-request-id"),
request_id=request.state.request_id,
),
)
@@ -100,19 +137,25 @@ def create_app() -> FastAPI:
"VALIDATION_ERROR",
"Validation failed",
exc.errors(),
request_id=request.headers.get("x-request-id"),
request_id=request.state.request_id,
),
)
@app.exception_handler(Exception)
async def unexpected_error(request: Request, exc: Exception): # noqa: ARG001
async def unexpected_error(request: Request, exc: Exception):
logger.exception(
"Unhandled request error request_id=%s method=%s path=%s",
request.state.request_id,
request.method,
request.url.path,
)
return JSONResponse(
status_code=500,
content=_to_error_payload(
"INTERNAL_ERROR",
"Unexpected server error",
{"type": exc.__class__.__name__},
request_id=request.headers.get("x-request-id"),
request_id=request.state.request_id,
),
)
+13
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@@ -23,7 +23,13 @@ class HealthResponse(BaseModel):
status: str
service: str
version: str
build_sha: str | None = None
build_time: str | None = None
database: str | None = None
postgis: str | None = None
migration: str | None = None
storage: str | None = None
checks: dict[str, str] = Field(default_factory=dict)
class SystemCapabilities(BaseModel):
@@ -31,7 +37,14 @@ class SystemCapabilities(BaseModel):
rasterio: bool
geopandas: bool
yolo: bool | str
yolo_status: str
sam: bool | str
grb: str
sentinel: str
version: str
build_sha: str | None = None
providers: list[ProviderCapability] = Field(default_factory=list)
class SystemCapabilitiesEnvelope(BaseModel):
data: SystemCapabilities
@@ -0,0 +1,58 @@
from __future__ import annotations
from dataclasses import dataclass
from datetime import datetime, timezone
from sqlalchemy.orm import Session
from app.models import AnalysisRun, Job
@dataclass(frozen=True)
class ReconciliationResult:
interrupted_jobs: int
interrupted_analysis_runs: int
class RuntimeReconciliationService:
ERROR_MESSAGE = (
"PROCESS_INTERRUPTED: the GeoIntel process restarted before this work "
"reached a terminal state"
)
@staticmethod
def reconcile(
db: Session,
*,
finished_at: datetime | None = None,
) -> ReconciliationResult:
resolved_finished_at = finished_at or datetime.now(timezone.utc)
interrupted_jobs = (
db.query(Job)
.filter(Job.status == "running")
.update(
{
Job.status: "failed",
Job.finished_at: resolved_finished_at,
Job.error_message: RuntimeReconciliationService.ERROR_MESSAGE,
},
synchronize_session=False,
)
)
interrupted_analysis_runs = (
db.query(AnalysisRun)
.filter(AnalysisRun.status == "running")
.update(
{
AnalysisRun.status: "failed",
AnalysisRun.finished_at: resolved_finished_at,
AnalysisRun.error_message: RuntimeReconciliationService.ERROR_MESSAGE,
},
synchronize_session=False,
)
)
db.commit()
return ReconciliationResult(
interrupted_jobs=interrupted_jobs,
interrupted_analysis_runs=interrupted_analysis_runs,
)
+2 -2
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@@ -204,9 +204,9 @@ def test_compose_mounts_demo_fixtures_for_backend_runtime() -> None:
def test_compose_has_backend_and_frontend_healthchecks() -> None:
compose = (ROOT / "docker-compose.yml").read_text(encoding="utf-8")
assert "http://127.0.0.1:8000/health" in compose
assert "http://127.0.0.1:8000/health/ready" in compose
assert "urllib.request.urlopen" in compose
assert "http://127.0.0.1/health" in compose
assert "http://127.0.0.1/health/ready" in compose
assert "wget -q -O -" in compose
assert "start_period: 30s" in compose
assert "start_period: 10s" in compose
+77 -11
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@@ -1,34 +1,100 @@
from __future__ import annotations
from types import SimpleNamespace
from fastapi.testclient import TestClient
from app.api.routes import health
from app.main import app
def test_health_endpoint_returns_status_payload() -> None:
client = TestClient(app)
response = client.get("/health")
READY_DATABASE = {
"database": "ok",
"postgis": "ok:3.4 USE_GEOS=1 USE_PROJ=1",
"migration": "ok:202607160001",
}
def test_liveness_is_independent_from_database(monkeypatch) -> None:
monkeypatch.setattr(
health,
"_database_checks",
lambda: (_ for _ in ()).throw(AssertionError("must not query DB")),
)
response = TestClient(app).get("/health/live")
assert response.status_code == 200
assert response.json()["status"] == "ok"
def test_readiness_returns_ok_only_when_all_checks_pass(monkeypatch) -> None:
monkeypatch.setattr(health, "_database_checks", lambda: READY_DATABASE.copy())
monkeypatch.setattr(health, "_storage_check", lambda _: "ok")
response = TestClient(app).get("/health/ready")
assert response.status_code == 200
payload = response.json()
assert payload["status"] in {"ok", "degraded"}
assert payload["status"] == "ok"
assert payload["service"] == "geointel-backend"
assert payload["version"] == "0.1.0"
assert payload["database"] == "ok"
assert payload["postgis"].startswith("ok:")
assert payload["migration"] == "ok:202607160001"
assert payload["storage"] == "ok"
def test_system_capabilities_reports_gis_dependency_flags(monkeypatch) -> None:
def test_compatibility_health_is_fail_closed(monkeypatch) -> None:
monkeypatch.setattr(
health,
"_database_checks",
lambda: {
"database": "degraded",
"postgis": "degraded",
"migration": "degraded",
},
)
monkeypatch.setattr(health, "_storage_check", lambda _: "ok")
response = TestClient(app).get("/health")
assert response.status_code == 503
assert response.json()["status"] == "degraded"
def test_system_capabilities_report_runtime_state(monkeypatch) -> None:
monkeypatch.setattr(
health,
"_dependency_enabled",
lambda module_name: module_name in {"rasterio", "geopandas"},
)
monkeypatch.setattr(health, "_database_checks", lambda: READY_DATABASE.copy())
monkeypatch.setattr(
health.ModelRegistryService,
"get_model_capability",
lambda *args, **kwargs: SimpleNamespace(
configured=True,
status="configured",
),
)
client = TestClient(app)
response = client.get("/api/v1/system/capabilities")
response = TestClient(app).get("/api/v1/system/capabilities")
assert response.status_code == 200
payload = response.json()
assert payload["data"]["rasterio"] is True
assert payload["data"]["geopandas"] is True
payload = response.json()["data"]
assert payload["postgis"] is True
assert payload["rasterio"] is True
assert payload["geopandas"] is True
assert payload["yolo"] is True
assert payload["yolo_status"] == "configured"
assert payload["version"]
def test_requests_receive_a_correlation_id() -> None:
client = TestClient(app)
generated = client.get("/health/live")
retained = client.get("/health/live", headers={"x-request-id": "test-request"})
assert generated.headers["x-request-id"]
assert retained.headers["x-request-id"] == "test-request"
@@ -0,0 +1,75 @@
from __future__ import annotations
import subprocess
from pathlib import Path
ROOT = Path(__file__).resolve().parents[2]
SCRIPTS = ROOT / "scripts"
def read(name: str) -> str:
return (SCRIPTS / name).read_text(encoding="utf-8")
def test_backup_is_atomic_read_only_and_checksum_bound() -> None:
script = read("backup_release_state.sh")
assert "pg_dump" in script
assert "-Fc" in script
assert "--no-owner" in script
assert "CHECKSUMS.sha256" in script
assert "database-password" not in script.lower()
assert "mv \"$PARTIAL\" \"$FINAL\"" in script
assert "rm -rf -- \"$PARTIAL\"" in script
assert "DROP DATABASE" not in script
assert "pg_restore --clean" not in script
def test_backup_verification_is_read_only() -> None:
script = read("verify_release_backup.sh")
assert "sha256sum -c CHECKSUMS.sha256" in script
assert "pg_restore --list" in script
assert "createdb" not in script
assert "dropdb" not in script
assert "pg_restore --clean" not in script
def test_restore_smoke_is_forced_to_generated_isolated_database() -> None:
script = read("restore_release_backup_smoke.sh")
assert "--confirm-isolated-restore" in script
assert "geointel_restore_verify_" in script
assert 'if [ "$TARGET_DB" = "$DB_NAME" ]' in script
assert "createdb" in script
assert "dropdb --if-exists" in script
assert "pg_restore \\\n --clean" not in script
assert '"production_database_untouched": True' in script
def test_release_safety_scripts_have_valid_bash_syntax() -> None:
for name in (
"backup_release_state.sh",
"verify_release_backup.sh",
"restore_release_backup_smoke.sh",
):
result = subprocess.run(
["bash", "-n", f"scripts/{name}"],
cwd=ROOT,
capture_output=True,
text=True,
check=False,
)
assert result.returncode == 0, f"{name}: {result.stderr}"
def test_readiness_gate_checks_release_safety_scripts() -> None:
readiness = read("run_readiness_check.sh")
for name in (
"backup_release_state.sh",
"verify_release_backup.sh",
"restore_release_backup_smoke.sh",
):
assert f"bash -n scripts/{name}" in readiness
+82
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@@ -0,0 +1,82 @@
from __future__ import annotations
import importlib.util
import json
import subprocess
import sys
from pathlib import Path
ROOT = Path(__file__).resolve().parents[2]
SCRIPT = ROOT / "scripts" / "capture_release_evidence.py"
def load_script():
spec = importlib.util.spec_from_file_location("capture_release_evidence", SCRIPT)
assert spec is not None and spec.loader is not None
module = importlib.util.module_from_spec(spec)
spec.loader.exec_module(module)
return module
def test_release_evidence_manifest_is_secret_free_and_read_only(tmp_path: Path) -> None:
module = load_script()
args = module.parse_args(
[
"--output",
str(tmp_path / "evidence.json"),
"--release-id",
"test-rc",
]
)
manifest = module.build_manifest(args)
assert manifest["schema_version"] == 1
assert manifest["release_id"] == "test-rc"
assert manifest["read_only"] is True
assert manifest["scope"] == "Belgium and the Belgian North Sea"
assert "DATABASE_URL" not in json.dumps(manifest).replace(
'"DATABASE_URL": false',
"",
).replace(
'"DATABASE_URL": true',
"",
)
assert manifest["storage"] == {"requested": False}
assert manifest["live"] == {"requested": False}
def test_release_evidence_cli_writes_single_head_manifest(tmp_path: Path) -> None:
output = tmp_path / "baseline.json"
result = subprocess.run(
[
sys.executable,
str(SCRIPT),
"--output",
str(output),
"--release-id",
"test-cli",
],
cwd=ROOT,
capture_output=True,
text=True,
check=False,
timeout=60,
)
assert result.returncode == 0, result.stderr
payload = json.loads(output.read_text(encoding="utf-8"))
assert payload["git"]["commit"]
assert payload["migrations"]["single_head"] is True
assert payload["files"]["docs/RC_SCOPE_FREEZE_BELGIUM_NORTH_SEA.md"]["sha256"]
assert payload["files"]["docs/RC_ROADMAP_BELGIUM_NORTH_SEA.md"]["sha256"]
def test_readiness_gate_compiles_release_evidence_command() -> None:
readiness = (ROOT / "scripts" / "run_readiness_check.sh").read_text(
encoding="utf-8"
)
assert "py_compile scripts/capture_release_evidence.py" in readiness
@@ -0,0 +1,50 @@
from __future__ import annotations
from datetime import datetime, timezone
from unittest.mock import MagicMock
from app.models import AnalysisRun, Job
from app.services.runtime_reconciliation_service import RuntimeReconciliationService
def test_reconciliation_terminalizes_only_running_work() -> None:
db = MagicMock()
jobs = MagicMock()
runs = MagicMock()
jobs.filter.return_value.update.return_value = 5
runs.filter.return_value.update.return_value = 2
db.query.side_effect = [jobs, runs]
finished_at = datetime(2026, 7, 17, 20, 0, tzinfo=timezone.utc)
result = RuntimeReconciliationService.reconcile(
db,
finished_at=finished_at,
)
assert result.interrupted_jobs == 5
assert result.interrupted_analysis_runs == 2
jobs.filter.assert_called_once()
runs.filter.assert_called_once()
job_values = jobs.filter.return_value.update.call_args.args[0]
run_values = runs.filter.return_value.update.call_args.args[0]
assert job_values[Job.status] == "failed"
assert job_values[Job.finished_at] == finished_at
assert "PROCESS_INTERRUPTED" in job_values[Job.error_message]
assert run_values[AnalysisRun.status] == "failed"
assert run_values[AnalysisRun.finished_at] == finished_at
assert "PROCESS_INTERRUPTED" in run_values[AnalysisRun.error_message]
db.commit.assert_called_once_with()
def test_startup_reconciliation_is_enabled_only_in_all_in_one_runtime() -> None:
start_script = (
__import__("pathlib").Path(__file__).resolve().parents[2]
/ "deploy"
/ "unraid"
/ "all-in-one-start.sh"
).read_text(encoding="utf-8")
assert (
'GEOINTEL_RECONCILE_INTERRUPTED_RUNS_ON_STARTUP:-true'
in start_script
)
@@ -99,7 +99,7 @@ def test_unraid_all_in_one_runtime_starts_embedded_postgis_backend_and_nginx() -
assert "migrate_compose_volume_if_needed" in dockerman_script
assert "docker rm -f geointel" in dockerman_script
assert "proxy_pass http://127.0.0.1:8000/api/" in nginx_config
assert "proxy_pass http://127.0.0.1:8000/health" in nginx_config
assert "proxy_pass http://127.0.0.1:8000/health/ready" in nginx_config
assert "location = /geointel-icon.png" in nginx_config
assert "frontend/node_modules" in dockerignore
assert "storage" in dockerignore